Digital Imaging Research Centre | Mobile Information & Network Technologies Centre | Jean-Christophe Nebel

Jean-Christophe Nebel Reader Email address: j.nebel@kingston.ac.uk School of Computing and Information Systems Faculty of Science, Engineering and Computing Kingston University, London Kingston Upon Thames Surrey KT1 2EE, UK For more information, see my personal homepage.

Current research activities

Bioinformatics & Genomic Signal Processing Research Group - Analysis of genomics and proteomics data using statistical, machine learning and signal processing techniques	Human Body Motion Research Group - Extraction, analysis and synthesis of human motion using video footage and motion capture data
Supervision of Undergraduate and Master projects

Past research projects

MEDUSA - 3D posture recovery from video sequence	PAVR: Platform for Animation and Virtual Reality - Cooperation in a distributed virtual environment
V-Man - The Virtual Man.	3D Thermography - 3D Thermography in the diagnostic of equine lameness
Facial surgery planning - CLAPA (Cleft Lip and Palate) and orthognathic surgery planning	Virtual surgery - Techniques to generate, model and deform 3D data
Michelangelo - 3D dynamic full body scanner development	Keyframe Animation of Articulated Figures - Collision Avoidance
Parallel raytracing - Parallel architectures with distributed memories and CPU power

Free resources

Nestor3D - Free software allowing the multiple alignment of a set of protein structures containing either ligands, prosthetic groups or PROSITE patterns. It generates consensus 3D pattern including atom, chemical group and cavity positions.

Protein Sequence Converter - Generate opproteins and reverse sequences

Publications (Most cited papers)

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• Dense Pixel Matching Between Unrectified And Distorted Images Using Dynamic Programming, J. Thevenon, J. Martínez del Rincón, R. Dieny and J.-C. Nebel, International Conference on Computer Vision Theory and Applications, 24-26 February, Rome, Italy, 2012 [PDF]
• Structure prediction of LDLR-HNP1 complex based on docking enhanced by LDLR binding 3D motif, R. Esmaielbeiki, D. Naughton and J.-C. Nebel, Protein & Peptide Letters, 19(12), 2012
• Ab initio Protein Structure Prediction: Methods and Challenges, J. Abbass, J.-C. Nebel and N. Mansour, in Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data, M. Elloumi and A. Y. Zomaya (Eds.), Wiley Book Series on Bioinformatics: Computational Techniques and Engineering, Wiley-Blackwell, John Wiley & Sons Ltd., New Jersey, USA (Publish.), To Appear, 2012

• Comparative Analysis of Genomic Signal Processing for Microarray data Clustering, R. Istepanian, A. Sungoor and J.-C. Nebel, IEEE Transactions on NanoBioscience, 10(4): 225-238, 2011
• Graph-based Particle Filter for Human Tracking with Stylistic Variations, J. Martínez del Rincón, J.-C. Nebel and D. Makris, British Machine Vision Conference (BMVC 2011), September, Dundee, UK, 2011 (Best poster paper prize award) [PDF]
• Are Current Monocular Computer Vision Systems for Human Action Recognition Suitable for Visual Surveillance Applications?, J.-C. Nebel, M. Lewandowski, J. Thevenon, F. Martinez and S. Velastin, International Symposium on Visual Computing, September 26-28, Las Vegas, Nevada, USA, 2011 [PDF]
• Integration of Bottom-Up/Top-Down Approaches for 2D Pose Estimation Using Probabilistic Gaussian Modelling, P. Kuo, D. Makris and J.-C. Nebel, Computer Vision and Image Understanding, 115(2), pp 242-255, 2011 [PDF]
• Probabilistic Feature Extraction from Time Series using Spatio-Temporal Constraints, M. Lewandowski, D. Makris and J.-C. Nebel, Pacific-Asia Conference on Knowledge Discovery and Data Mining, May 24-27, Shenzhen, China, 2011 [PDF]
• Human pose tracking in low dimensional space enhanced by limb correction, A. Moutzouris, J Martínez del Rincón, M Lewandowski, J.-C. Nebel and D. Makris, IEEE International Conference on Image Processing, Sept 11, Brussels, 2011 [PDF]
• Bioinformatics inspired algorithm for stereo correspondence, R. Dieny, J. Thevenon, J. Martínez del Rincón, J.-C. Nebel, International Conference on Computer Vision Theory and Applications, March 5-7, Vilamoura - Algarve, Portugal, 2011 [PDF]
• 2D and 3D pose recovery from a single uncalibrated video: A view and activity independent framework, J.C. Nebel, P. Kuo and D. Makris, In Multimedia Analysis, Processing and Communication, Studies in Computational Intelligence Edited by Li, W.;Tao, D.;Kacprzyk, J.;Khu, L.;Izquierdo, E.;Wang, H., Springer, 346, pp 391-411, 2011
• Dissecting functional domains on nucleotide sugar transporters, I. Moreno, A. Moreno, M. Donoso, C. Moraga, J.-C. Nebel and A. Orellana, Congreso de la Sociedad de Bioquímica y Biología Molecular de Chile, 27-30 September 2011, Pedro de Valdivia, Chile, poster

• Towards 3D modeling of TM interacting helix pairs based on classification of helix pair sequences, W. Dyrka, J.-C. Nebel and M. Kotulska, International Conference on Pattern Recognition in Bioinformatics, September 22-24, Nijmegen, The Netherlands, 2010 [PDF]
• View and Style-Independent Action Manifolds for Human Activity Recognition, M. Lewandowski, D. Makris and J.-C. Nebel, European Conference on Computer Vision (ECCV 2010), September 5-11, Crete, Greece, 2010 [PDF]
• Automatic Configuration of Spectral Dimensionality Reduction Methods, M. Lewandowski, D. Makris and J.-C. Nebel, Pattern Recognition Letters, 31(12), 2010 [PDF]
• Tracking Human Position and Body Parts Using Kalman and Particle Filters Constrained by Human Biomechanics, J. Martinez-del-Rincon, D. Makris, C. Orrite-Urunuela and J.-C. Nebel, IEEE Transactions on Systems Man and Cybernetics - Part B', 40(4), 2010 [PDF]
• Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7):854-860, 2010 [PDF]
• Temporal Extension of Laplacian Eigenmaps for Unsupervised Dimensionality Reduction of Time Series, M. Lewandowski, J. Martinez-del-Rincon, D. Makris and J.-C. Nebel, International Conference on Pattern Recognition (ICPR 2010), August 23-26, 2010, Istanbul, Turkey [PDF]
• 3D Pose Estimation from Silhouettes in Cyclic Activities Encoded by a Dense Gaussians Mixture Model, S. A. Dadgar, J.-C. Nebel and D. Makris, International Conference on Computer Vision Theory and Applications (VISAPP 2010), 17-21 May 2010, Angers, France [PDF]
• Genomic Signal Processing and Microarray Technologies for Personalised Healthcare, R. Istepanian, A. Sungoor and J.-C. Nebel, IEEE-AMA Medical Technology Conference on Individualized Healthcare, March 21-23 2010, Washington DC, USA [PDF]
• Predicting protein-Protein Interaction Using Mirror Tree, R. Esmaielbeiki and J.-C. Nebel, Third Iranian Conference on Bioinformatics, January 5-6 2010, Tehran, Iran, oral presentation [PDF]

• A Stochastic Context Free Grammar based Framework for Analysis of Protein Sequences, W. Dyrka and J.-C. Nebel, BMC Bioinformatics, 10:323, 2009 [PDF] (Cited by 8)
• Accuracy in predicting secondary structure of ionic channels, B. Konopka, W. Dyrka, J.-C. Nebel and M. Kotulska, International Conference on Computational Collective Intelligence, 5-7 October, 2009 Wroclaw, Poland, in 'New Challenges in Computational Collective Intelligence', Studies in Computational Intelligence, Springer-Verlag, 315-326, 2009 [PDF]
• Automatic configuration of spectral dimensionality reduction methods for 3D human pose estimation, M. Lewandowski, D. Makris and J.-C. Nebel, Visual Surveillance (VS2009), 3 October 2009, Kyoto, Japan [PDF]
• Detection and annotation of ligand binding sites based on atomic descriptors, J.-C. Nebel, Protein Sequence, structure and function (Biochemical Society / Wellcome Trust Focused Meeting), January 2009, Hinxton, UK, poster [PDF]
• Exploiting Human Bipedal Motion Constraints for 3D Pose Recovery from a Single Uncalibrated Camera, P. Kuo, A. Thibault, M. Lewandowski, D. Makris and J.-C. Nebel, International conference on Computer Vision theory and Applications (VISAPP2009), February 2009, Lisboa, Portugal [PDF]
• Automation of the CCTV-mediated detection of individuals illegally carrying firearms: combining psychological and technological approaches, I. T. Darker, P. Kuo, M. Y. Yang, A. Blechko, C. Grecos, D. Makris, J.-C. Nebel and A. G. Gale, SPIE Defense Security and Sensing Conference, April 2009, Orlando, USA [PDF]

• Integration of Local Image Cues for Probabilistic 2D Pose Recovery, P. Kuo, D. Makris, N. Megherbi and J.-C. Nebel, International Symposium on Visual Computing (ISVC2008), Springer-Verlag, December, Las Vegas, USA [PDF]
• Structure prediction of a protein channel based on probabilistic formal grammars and the continuous ion flow model, W. Dyrka, M. Kotulska and J.-C. Nebel, ECCB'08: European Conference on Computational Biology, 22-26 September 2008, poster [PDF]
• PROTOPOLO: PROtein complex TOPOLOgy database, I. Weheliye, J. Deivachandran and J.-C. Nebel, ECCB'08: European Conference on Computational Biology, 22-26 September 2008, poster [PDF]
• Tracking Human Body Parts Using Particle Filters Constrained by Human Biomechanics, J. Martinez-del-Rincon, J.-C. Nebel, D. Makris and C. Orrite-Urunuela, British Machine Vision Conference (BMVC 2008), September 2008, Leeds, UK [PDF]
• Fractal Dimension and Wavelet Decomposition for Robust Microarray Data Clustering, R. Istepanian, A. Sungoor and J.-C. Nebel, IEEE Engineering in Medicine and Biology Conference (EMBC08), August 2008, Vancouver, Canada [PDF]
• Automated Visual Surveillance: Detection of Criminal Behaviour, J.-C. Nebel, Invited Speaker at National conference on information & communication technology, 29 Feb-01 March 2008, Mumbai, India [PDF]

• Evaluation of the usage of probabilistic context-free grammars for the detection of binding sites within protein sequences, W. Dyrka and J.-C. Nebel, GCB'07: German Conference on Bioinformatics, 26-28 September 2007, Potsdam, Germany, poster [PDF]
• Camera Auto-Calibration from Articulated Motion, P. Kuo, J.-C. Nebel and D. Makris, IEEE International Conference on Advanced Video and Signal based Surveillance, 5-7 September 2007, London, UK [PDF]
• Automatic generation of 3D motifs for classification of protein binding sites, J.-C. Nebel, P. Herzyk and D. R. Gilbert, BMC Bioinformatics, 8:32, 2007 [PDF] (Cited by 17)
• Linear Predictive Coding and Wavelet Decomposition for Robust Microarray Data Clustering, R. Istepanian, A. Sungoor and J.-C. Nebel, IEEE International Conference on Engineering in Medicine and Biology Society (EMBC07), 23-26 August 2007, Lyon, France [PDF]
• Linear predictive coding for enhanced microarray data clustering, R. Istepanian, A. Sungoor and J.-C. Nebel, IEEE International Workshop on Genomic Signal Processing and Statistics, 10-12 June 2007, Tuusula, Finland [PDF]
• A probabilistic context-free grammar for the detection of binding sites from a protein sequence, W. Dyrka and J.-C. Nebel, BMC Systems Biology 2007, 1(Suppl 1):P78, BioSysBio 2007, 11-13 January 2007, Manchester, UK, poster [PDF]

• Description and comparison of protein quaternary structures, M. Akbary-Gasany and J.-C. Nebel, GCB'06: German Conference on Bioinformatics, 20-22 September 2006, Tuebingen, Germany, poster [PDF]
• Generation of 3D templates of active sites of proteins with rigid prosthetic groups, J.-C. Nebel, Bioinformatics, 22(10):1183-1189, 2006 [PDF] (Cited by 12)

• Channel Coding Theory for Microarray Data Analysis, A. Sungoor, R. S. H. Istepanian and J.-C. Nebel, Young Bioinformaticians Forum 2005, London, October 2005, poster [PDF]
• Generation of 3D templates of active sites of proteins with rigid prosthetic groups, J.-C. Nebel, GCB'05: German Conference on Bioinformatics, 5-7 October 2005, Hamburg, Germany [PDF]
• Nestor3D: multiple alignment of protein structures based on ligand or prosthetic group position, J.-C. Nebel, BMC Bioinformatics 2005, 6(Suppl 3):S10, Bioinformatics & Systems Biology Conference, Oral presentation, 14-15 July 2005, Edinburgh, Scotland, UK [PDF]
• Pre-commercial 3D Digital TV studio, J.-C. Nebel, W. P. Cockshott, V. Yarmolenko, E. Borland and D. MacVicar, IEE Proceedings - Vision, Image & Signal Processing, Volume 152, Issue 6, pp. 665-667, December, 2005 [PDF]
• Modelling of P450 active site based on consensus 3D structures, J.-C. Nebel, International Conference on Biomedical Engineering, BioMed 2005, 16-18 February 2005, Innsbruck, Austria [PDF]

• Experimental 3D Digital TV studio, J.-C. Nebel, Poster for competition for Britain's Top Younger Engineer, 14 December 2004, House of Commons, UK, poster [PDF] and certificate [PDF]
• 3D thermography imaging standardization technique for inflammation diagnosis, X. Ju, J.-C. Nebel and J. P. Siebert, Photonics Asia 2004, Proceedings of SPIE, Vol. 5640-46, 8-12 November 2004, Beijing, China [PDF] (Cited by 8)

• A New Automated Workflow for 3D Character Creation Based on 3D Scanned Data, A. Sibiryakov, X. Ju and J.-C. Nebel, LNCS 2897, Virtual Storytelling, O. Balet, G. Subsol and P. Torguet (Editors), pp 155-162, 2003 [PDF]
• V-Man Generation for 3-D Real Time Animation, J.-C. Nebel, A. Sibiryakov and X. Ju, Workshop on Intelligent Motion and Interaction Within Virtual Environments, London, UK, 15-17 September 2003, Sponsored by NASA Ames, UCL and RIACS, NASA/CP-2005-213468, pp 59-75 [PDF]
• 3D Thermography for the quantification of heat generation resulting from inflammation, P. Aksenov, I. Clark, D. Grant, A. Inman, L. Vartikovski and J.-C. Nebel, Proc. 8th 3D Modelling symposium, Paris, France, 2003 [PDF] (Cited by 9)
• An Experimental 3D Digital TV studio, W. P. Cockshott, S. Hoff and J.-C. Nebel, IEE Proceedings - Vision, Image & Signal Processing, Vol. 150, Issue 1, pp 28-33, February 2003 (A H Reeve Premium awarded by the IEE Council) [PDF] (Cited by 13)

• Range flow from stereo-temporal matching: application to skinning, J.-C. Nebel and A. Sibiryakov, IASTED International Conference on Visualization, Imaging, and Image Processing, Malaga, Spain, 2002 [PDF] (Cited by 11)
• A pilot study: 3D stereo photogrammetric image superimposition onto 3D CT scan images - the future of orthognathic surgery, B. Khambay, J.-C. Nebel, J. Bowman, A. Ayoub, F. Walker and D. Hadley,
  • The International Journal of Adult Orthodontics & Orthognathic Surgery, Winter 2002, Volume 17, Issue 4, pp 331-341 [PDF] (Cited by 43)
  • British Orthodontic Conference 2002, Poster presentation, Glasgow, UK, 22-25 September 2002, poster [PDF]
  • Medical Image Understanding and Analysis 2002, Poster presentation, Portsmouth, UK, 22-23 July 2002, paper [PDF]
• An Experimental 3D Digital TV studio, W. P. Cockshott, S. Hoff and J.-C. Nebel, Dpt of Computing Science, University of Glasgow, UK, Internal Report TR-2002-109, 18 pages, April 2002 [PDF]
• Study of the breathing pattern based on 4D data collected by a dynamic 3D body scanner, L. Benton and J.-C. Nebel, Proc. 7th Numérisation 3D/Scanning 2002 Congress, Paris, France, 2002 [PDF]

• Avatars and virtual characters, Invited speakers: B. Bouju, L. Martin, J.-C. Nebel, C. Guiard and T. Cheysson, The third international forum for animation technologies - Cartoon Master, 15-17 November 2001, Angouleme, France, Proceedings (in French) [PDF]
• Soft Tissue Modelling from 3D Scanned Data, J.-C. Nebel, Deformable Avatars, N. Magnenat-Thalmann and D. Thalmann (Editors), Kluwer, pp. 85-97, 2001 [PDF] (Cited by 15)
• Generation of True 3D Films, J.-C. Nebel, LNCS 2197, Virtual Storytelling, O. Balet, G. Subsol and P. Torguet (Editors), Springer-Verlag, pp 10-19, 2001 [PDF]
• Stroboscopic stereo rangefinder, J.-C. Nebel, F. J. Rodriguez-Miguel and W. P. Cockshott, 3DIM2001, May 28 - June 1, 2001, Québec City, Canada [PDF] (Cited by 8)

• Soft Tissue Modelling from 3D Scanned Data, J.-C. Nebel, Deform2000, Geneva, Switzerland, 29-30 November 2000 [PDF]
• Realistic collision avoidance of upper limbs based on neuroscience models, J.-C. Nebel, Computer Graphics Forum, 2000, volume 19(3), pp 219-228, August 2000 [PDF] (Cited by 10)

• Keyframe interpolation with self-collision avoidance, J.-C. Nebel, Eurographics Workshop on Computer Animation and Simulation, Milan, Italy, September 1999 [PDF] (Cited by 14)
• Collaborative animation over the network, F. Faure, C. Faisstnauer, G. Hesina, A. Aubel, M. Escher, F. Labrosse, J.-C. Nebel and J.-D. Gascuel, CA'99 Conference, 26-29 May 1999, Geneva, Switzerland [PDF] (Cited by 12)
• Keyframe Animation of Articulated Figures Using Autocollision-Free Interpolation, J.-C. Nebel, 17th Eurographics UK Conference'99, 13-15 April 1999, Cambridge, UK (Honourable mention at the best paper award) [PDF] (Cited by 9)

• A New Parallel Algorithm Provided by a Computation Time Model, J.-C. Nebel, Eurographics Workshop on Parallel Graphics and Visualisation, 24-25 September 1998, Rennes, France [PDF]
• A Concurrent Dataflow Algorithm for RayTracing, J.-C. Nebel, 16th Eurographics UK Conference'98, 25-27 March 1998, Leeds, UK [PDF]

• Developpement de techniques de lancer de rayon dans des geometries 3D adaptees aux machines massivement paralleles, J.-C. Nebel, PhD thesis (in French), December 1997, University of St-Etienne, France [PDF]
• A Mixed Dataflow Algorithm for RayTracing on the CRAY T3E, J.-C. Nebel, Third European CRAY-SGI MPP Workshop, 11-12 September 1997, Paris, France [PDF]